BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB028A07SP1|AL428828
(887 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1004 1248 0.0
>3x_Contig1004
Length = 3994
Score = 1248 bits (623), Expect = 0.0
Identities = 630/631 (99%), Gaps = 1/631 (0%)
Strand = Plus / Minus
Query: 29 aagcacataaacatatcttaaccaaggaaacgatgcagtatcgtgttgatttcagtagtg 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 aagcacataaacatatcttaaccaaggaaacgatgcagtatcgtgttgatttcagtagtg 728
Query: 89 atgggaagatggaattacatgagcgtggtatcaagaagaaatgtgaacatatcatccagt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 atgggaagatggaattacatgagcgtggtatcaagaagaaatgtgaacatatcatccagt 668
Query: 149 tgatagaggatacttcttacttgaaacgcgagcgttccaagaccgcggaaaatacacaaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tgatagaggatacttcttacttgaaacgcgagcgttccaagaccgcggaaaatacacaaa 608
Query: 209 aaatcgttgccggatctgccggatctcgctcagaatctctgtataacgatatttccatca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aaatcgttgccggatctgccggatctcgctcagaatctctgtataacgatatttccatca 548
Query: 269 atgcagactctttcgccggatcgtcttctaccattgatgactcggacgacttcgaatatg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 atgcagactctttcgccggatcgtcttctaccattgatgactcggacgacttcgaatatg 488
Query: 329 aacctactccaacggctcacagagatcgtagatcgtnctgctgtggacgaacagagaaga 388
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 487 aacctactccaacggctcacagagatcgtagatcgt-ctgctgtggacgaacagagaaga 429
Query: 389 cagagaagagagctattacgagaaagaatccgtaacagtgaacatcaaagaaaagtctcc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cagagaagagagctattacgagaaagaatccgtaacagtgaacatcaaagaaaagtctcc 369
Query: 449 gcgcaggaaccagaaatcgatctattggacttcgatgatgcaccagctcctgcttctcct 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gcgcaggaaccagaaatcgatctattggacttcgatgatgcaccagctcctgcttctcct 309
Query: 509 tcaatcaacaatagcaataatgctaacgtattcgagagcttcggtgttgatggtgaagat 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tcaatcaacaatagcaataatgctaacgtattcgagagcttcggtgttgatggtgaagat 249
Query: 569 gatgacgatgatgaatttggtgattttcaaagtgagaaaagtccagttccacctgcatct 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gatgacgatgatgaatttggtgattttcaaagtgagaaaagtccagttccacctgcatct 189
Query: 629 ggtaactttaacagttttggtaacgataata 659
|||||||||||||||||||||||||||||||
Sbjct: 188 ggtaactttaacagttttggtaacgataata 158
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7388
Number of Sequences: 1807
Number of extensions: 7388
Number of successful extensions: 478
Number of sequences better than 1.0e-20: 1
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.6 bits)